13 minute read

Exploring GraphDB and Neo4j

RDBMS vs. Neo4j (Cypher) Command ComparisonPermalink

Are GraphDB faster than RDBMS?Permalink

Graph databases (GraphDBs) can be faster than relational databases (RDBMS) in scenarios that involve complex relationships and deep traversals, but they are not always universally faster. It depends on the query type, data structure, and use case.

When GraphDBs Are Faster Than RDBMSPermalink

Highly Connected Data (Deep Relationships)

  • Example: Finding friends-of-friends in a social network.
  • GraphDB Advantage: Uses index-free adjacency, meaning each node stores direct references to its neighbors, making traversal O(1) per hop.
  • RDBMS Disadvantage: Requires multiple JOINs across tables, which can become expensive, leading to O(n²) or worse in deep relationships.

Example Query: “Find all friends-of-friends of a user.”

  • GraphDB (Neo4j):
     MATCH (p:Person {name: 'Alice'})-[:FRIEND*2]->(fof)
     RETURN fof
    
  • RDBMS (SQL with JOINs):
     SELECT DISTINCT f2.*
     FROM friends f1
     JOIN friends f2 ON f1.friend_id = f2.person_id
     WHERE f1.person_id = (SELECT id FROM persons WHERE name = 'Alice');
    

Recursive Queries

  • Example: Finding shortest paths (e.g., route optimization).
  • GraphDB Advantage: Uses native graph traversal algorithms (e.g., Dijkstra, A*), which are optimized for pathfinding.
  • RDBMS Disadvantage: SQL requires recursive Common Table Expressions (CTEs), which are computationally expensive.

Dynamic Schema & Evolving Relationships

  • Example: Adding new types of relationships on the fly.
  • GraphDB Advantage: Schema-less or flexible schema, so new relationships can be added without altering existing data structures.
  • RDBMS Disadvantage: Requires schema migrations and adding foreign keys, which can be complex and costly.

When RDBMS Are Faster Than GraphDBsPermalink

Simple Queries & Large, Flat Datasets

  • Example: Retrieving millions of customer records based on indexed attributes.
  • RDBMS Advantage: Indexes (B-trees, hash indexes) are highly optimized for fast lookups.
  • GraphDB Disadvantage: Nodes are optimized for relationships, not for flat, tabular scans.

OLTP Workloads (High Transactional Volume)

  • Example: Banking transactions with ACID compliance.
  • RDBMS Advantage: Designed for highly structured transactions.
  • GraphDB Disadvantage: Some graph databases struggle with high transaction throughput.

Aggregations & Reporting (OLAP Queries)

  • Example: Summing up total sales across millions of transactions.
  • RDBMS Advantage: SQL engines like PostgreSQL, MySQL, and Snowflake are optimized for large aggregations.
  • GraphDB Disadvantage: Graph traversal is node-by-node, making bulk aggregations slower.

When to Use GraphDB vs. RDBMS

Use Case GraphDB (Neo4j, ArangoDB, TigerGraph) RDBMS (PostgreSQL, MySQL, Oracle)
Social Networks ✅ Fast relationship queries ❌ Expensive JOINs
Recommendation Engines ✅ Graph traversals (collaborative filtering) ❌ Multiple JOINs
Fraud Detection ✅ Pattern recognition in networks ❌ Complex SQL queries
Pathfinding (e.g., Google Maps) ✅ Shortest path algorithms ❌ Recursive CTEs are slow
E-commerce Transactions ❌ Not optimized for bulk inserts ✅ ACID-compliant transactions
Data Warehousing & BI ❌ Slow aggregations ✅ Optimized for OLAP

Final Verdict 🎯

  • Use GraphDB when your queries involve deep relationships, recursive paths, or network analysis.
  • Use RDBMS when dealing with structured, transactional, and analytical workloads.

When database is highly normalized upto 3.5 or 4 degree than does graphdb makes more sense?Permalink

Yes, when a relational database is highly normalized (3.5NF, 4NF, or beyond), a GraphDB often makes more sense—especially if queries frequently involve complex relationships and multi-table JOINs. Why GraphDB Is Better for Highly Normalized Data?

JOIN Explosion in RDBMS

  • In 3NF, 4NF normalization, data is split into many tables to remove redundancy.
  • Queries require multiple JOINs to reconstruct meaningful relationships.
  • GraphDB eliminates JOINs by directly linking related entities.

Example: Academic Database (Students, Courses, Professors)

  • RDBMS (Highly Normalized)
     SELECT s.name, c.title, p.name
     FROM students s
     JOIN enrollments e ON s.id = e.student_id
     JOIN courses c ON e.course_id = c.id
     JOIN professors p ON c.professor_id = p.id
     WHERE s.name = 'Alice';
    
  • GraphDB (Neo4j)
     MATCH (s:Student {name: 'Alice'})-[:ENROLLED_IN]->(c:Course)<-[:TEACHES]-(p:Professor)
     RETURN s, c, p;
    
  • GraphDB Wins: No need for JOINs; relationships are direct.

Performance Gains in Recursive Queries

  • In RDBMS, recursive relationships (e.g., hierarchies, bill of materials) use:
    • Recursive Common Table Expressions (CTEs)
    • Self-JOINs
  • GraphDB natively supports deep traversals with efficient pathfinding algorithms.

Example: “Find a Manager’s Reporting Chain (All Subordinates)”

  • RDBMS: Uses Recursive CTEs
     WITH RECURSIVE hierarchy AS (
        SELECT id, name, manager_id FROM employees WHERE id = 101
        UNION ALL
        SELECT e.id, e.name, e.manager_id
        FROM employees e
        JOIN hierarchy h ON e.manager_id = h.id
     )
     SELECT * FROM hierarchy;
    
  • GraphDB (Neo4j) Uses Simple Traversal
     MATCH (m:Manager {id: 101})<-[:REPORTS_TO*]-(e:Employee)
     RETURN e;
    
  • GraphDB Wins: No recursive CTEs, just direct traversal.

Better for Many-to-Many Relationships

  • RDBMS uses junction tables for many-to-many (M:N) relationships.
  • GraphDB stores them natively as edges.

Example: Authors and Books (M:N)

  • RDBMS: Requires Junction Table
     Authors (id, name)
     Books (id, title)
     Author_Book (author_id, book_id)  <-- Many-to-Many Table
    

    Query:

     SELECT a.name, b.title
     FROM authors a
     JOIN author_book ab ON a.id = ab.author_id
     JOIN books b ON ab.book_id = b.id;
    
  • GraphDB: Direct Relationship
     MATCH (a:Author)-[:WROTE]->(b:Book)
     RETURN a, b;
    
  • GraphDB Wins: No need for a join table.

When RDBMS Still Makes Sense
If the database is normalized but used mainly for transactional (OLTP) workloads.
If the system relies heavily on ACID transactions (e.g., banking, ERP).
If queries mostly involve flat tables without complex relationships.


Final Verdict

Factor GraphDB (Neo4j, ArangoDB, TigerGraph) RDBMS (PostgreSQL, MySQL, Oracle)
Deep Joins (3.5NF, 4NF Queries) ✅ Eliminates JOINs ❌ JOIN-heavy queries slow down
Recursive Queries (Hierarchy, Paths) ✅ Faster with built-in traversal ❌ Recursive CTEs are expensive
Many-to-Many Relationships ✅ Direct edges ❌ Needs extra join tables
Schema Evolution (Flexibility) ✅ Schema-less or flexible ❌ Requires schema migrations
Flat Data & Aggregations ❌ Not optimized ✅ Faster for OLAP queries

Use GraphDB if your normalized database has deep relationships.
Use RDBMS if your use case is more transactional and structured.

Node (of GraphDB) vs. Record (of RDBMS)Permalink

You can think of a node in a graph database is somewhat analogous to a record in a relational database (RDBMS).

Similarities to RDBMS records:

  • Both store data as properties/fields
  • Both can be uniquely identified (primary key in RDBMS, node ID in Neo4j)
  • Both contain related information about a single entity

Key differences:

  1. Multiple labels vs. single table: A node can have multiple labels, while a record belongs to exactly one table
  2. Schema flexibility: Nodes with the same label can have different properties, while records in the same table must conform to the table’s schema
  3. Relationship representation: Nodes directly link to other nodes via relationships, while RDBMS records use foreign keys and joins
  4. Property flexibility: You can easily add properties to nodes without affecting other nodes, unlike tables where adding columns affects all records

The biggest conceptual difference is how relationships are handled. In a graph database, relationships are first-class citizens with their own properties, providing a more natural way to represent complex networks of connected data compared to join tables in relational databases.

So while you can draw this parallel as a starting point for understanding, it’s important to recognize that graph databases like Neo4j represent a fundamentally different approach to data modeling.

Can a node have mutiple Labels?Permalink

Yes, in Neo4j a node can have multiple labels. This is one of the flexible features of Neo4j’s property graph model. Label is like table of RDBMS. It means a record (node) can be part of multiple tables (labels)!

For example, you could create a node with multiple labels like this:

CREATE (p:Person:Employee:Manager {name: 'John Doe', employeeId: '12345'})

This node has three labels: Person, Employee, and Manager, plus properties for name and employeeId.

Multiple labels are useful for:

  1. Classification: A node can belong to multiple categories simultaneously
  2. Inheritance-like modeling: You can have general labels (Person) and more specific ones (Employee, Manager)
  3. Filtering efficiency: You can use the most specific label in queries for better performance

When querying, you can match on any combination of these labels:

MATCH (p:Person) RETURN p          // Returns all persons
MATCH (p:Employee) RETURN p        // Returns all employees
MATCH (p:Person:Manager) RETURN p  // Returns only persons who are also managers

This multi-label approach gives you flexibility in how you model and query your graph data.

Fundamental Difference between RDBMS (SQL) vs. Neo4j (Cypher) CommandPermalink

  1. Data Model:
    • RDBMS: Tables, rows, and columns with rigid schemas
    • Neo4j: Nodes (with labels), relationships, and properties with flexible schemas
  2. Relationships:
    • RDBMS: Implemented through foreign keys and JOIN operations
    • Neo4j: First-class citizens with their own properties and types
  3. Query Approach:
    • RDBMS: Set-based operations on tables
    • Neo4j: Pattern matching through the graph
  4. Schema Requirements:
    • RDBMS: Schema must be defined before data is added
    • Neo4j: Schema-optional (can add properties dynamically)
  5. Multi-Entity Modeling:
    • RDBMS: An entity belonging to multiple categories requires multiple tables or complex inheritance strategies
    • Neo4j: Simply add multiple labels to a node

When transitioning from relational thinking to graph thinking, focus on how entities relate to each other rather than how data fits into tables. The most powerful aspect of graph databases is their ability to represent complex, interconnected data naturally and query these relationships efficiently.

Understanding GraphQL with SQL CommandsPermalink

Those who understand SQL commands will find it easier to learn GraphQL. Here’s a comparison of RDBMS (SQL) and Neo4j (Cypher) commands:

Operation RDBMS (SQL) Neo4j (Cypher) Notes
Create Data Structure CREATE TABLE Person (id INT PRIMARY KEY, name VARCHAR(255)) CREATE (n:Person {id: 1, name: 'John'}) Neo4j is schema-optional; no need to define structure before adding data
Insert Data INSERT INTO Person (id, name) VALUES (1, 'John') CREATE (n:Person {id: 1, name: 'John'}) Same command creates both structure and data in Neo4j
Add Field/Property ALTER TABLE Person ADD age INT Just add property: MATCH (p:Person {id: 1}) SET p.age = 30 No schema alteration needed in Neo4j
Update Data UPDATE Person SET name = 'Johnny' WHERE id = 1 MATCH (p:Person {id: 1}) SET p.name = 'Johnny' Both use filtering to target updates
Query All SELECT * FROM Person MATCH (p:Person) RETURN p Similar concept but different syntax
Filter Data SELECT * FROM Person WHERE name = 'John' MATCH (p:Person) WHERE p.name = 'John' RETURN p Similar conditional filtering
Join Tables SELECT * FROM Person p JOIN Order o ON p.id = o.person_id MATCH (p:Person)-[:PLACED]->(o:Order) RETURN p, o Relationships are explicit in Neo4j
Aggregation SELECT COUNT(*) FROM Person MATCH (p:Person) RETURN COUNT(p) Similar aggregation functions
Delete Data DELETE FROM Person WHERE id = 1 MATCH (p:Person {id: 1}) DELETE p Similar concept
Create Index CREATE INDEX idx_person_name ON Person(name) CREATE INDEX FOR (p:Person) ON (p.name) Both improve query performance
Multiple Table/Label Query SELECT * FROM Person p, Employee e WHERE p.id = e.person_id MATCH (n:Person:Employee) RETURN n In Neo4j, a single node can have multiple labels
Subquery SELECT * FROM Person WHERE id IN (SELECT person_id FROM Employee) MATCH (p:Person) WHERE EXISTS { MATCH (p)-[:WORKS_AT]->(:Company) } RETURN p Different approach to nested queries
Transactions BEGIN; [operations]; COMMIT; BEGIN; [operations]; COMMIT; Similar transaction concepts
Create Relationship Create join table or foreign keys MATCH (a:Person), (b:Company) WHERE a.id = 1 AND b.id = 2 CREATE (a)-[:WORKS_AT]->(b) Relationships are first-class citizens in Neo4j
Multiple Joins SELECT * FROM Person p JOIN Order o ON p.id = o.person_id JOIN Product pr ON o.product_id = pr.id MATCH (p:Person)-[:PLACED]->(o:Order)-[:CONTAINS]->(pr:Product) RETURN p, o, pr Path traversal is more intuitive in Neo4j

How to represent relationships in Neo4jPermalink

This Cypher query is written for Neo4j and is checking whether a Person node (p) has an outgoing WORKS_AT relationship to a Company node. If such a relationship exists, it returns the Person node.

MATCH (p:Person)
WHERE EXISTS { MATCH (p)-[:WORKS_AT]->(:Company) }
RETURN p
  1. MATCH (p:Person)
    • Finds all nodes with the Person label and assigns them to p.
  2. WHERE EXISTS { MATCH (p)-[:WORKS_AT]->(:Company) }
    • Uses a subquery inside EXISTS { ... } to check if there is at least one Company node connected to p via a WORKS_AT relationship.
    • If such a relationship exists, the Person node is included in the final result.
  3. RETURN p
    • Returns all Person nodes that satisfy the condition.

Why It Works This Way:

  • The subquery in EXISTS ensures that the p node is only included in the result if there is at least one matching Company node.
  • The matching inside EXISTS does not introduce new variables but simply checks for the existence of a pattern.

More Intuitive Alternative: Instead of using EXISTS, you could write:

MATCH (p:Person)-[:WORKS_AT]->(:Company)
RETURN p

This directly matches only those Person nodes that have a WORKS_AT relationship, which is arguably more intuitive.

Data storage techniques of Graphdb and RDBMSPermalink

Graph databases like Neo4j, ArangoDB, and TigerGraph use native graph storage that optimizes traversal speed and relationship lookups. Let’s break it down:


🟢 Storage of Nodes (Entities)Permalink

Nodes in a GraphDB are like rows in an RDBMS table, but they are stored with the following properties:

  • Node ID (Unique identifier)
  • Labels (Types) (e.g., Person, Company)
  • Properties (Key-value pairs like name: "Alice", age: 30)
  • Pointers to Relationships (Instead of storing foreign keys)

📌 How it’s Stored:
Most GraphDBs use linked lists, adjacency lists, or key-value stores for nodes.

  1. Adjacency List Representation (Common in Neo4j)
    Node Table:
    ┌────────┬─────────┬───────────────┬───────────┐
    │ NodeID │ Label   │ Properties    │ Relations │
    ├────────┼─────────┼───────────────┼───────────┤
    │ 1      │ Person  │ {name: Alice} │ [R1, R3]  │
    │ 2      │ Company │ {name: Acme}  │ [R2]      │
    └────────┴─────────┴───────────────┴───────────┘
    
  2. Key-Value Storage (Common in TigerGraph)
    Key: NodeID
    Value: {Label: Person, Properties: {name: "Alice", age: 30}}
    

📌 Advantages Over RDBMS:
✔ No need for foreign keys → Faster lookups
✔ Supports flexible schema → Nodes can have varying properties
✔ Stores direct pointers to relationships → Avoids costly JOINs


🔵 Storage of Relationships (Edges)Permalink

Relationships (edges) are first-class citizens in a GraphDB, unlike RDBMS where they are derived using JOINs.

A relationship contains:

  • Relationship ID (Unique identifier)
  • Type (e.g., WORKS_AT, FRIEND)
  • Start Node ID & End Node ID
  • Properties (e.g., {since: 2022})
  • Bidirectional Pointers (For fast traversal)

📌 How it’s Stored:

  1. Doubly Linked List Representation (Neo4j)
    Relationship Table:
    ┌───────┬────────┬────────┬───────────────┬────────────┐
    │ RelID │ Type   │ Start  │ End           │ Properties │
    ├───────┼────────┼────────┼───────────────┼────────────┤
    │ R1    │ FRIEND │ 1 (Alice) │ 3 (Bob) │ {since: 2020} |
    │ R2    │ WORKS_AT │ 1 (Alice) │ 2 (Acme) │ {since: 2022} |
    └───────┴────────┴────────┴───────────────┴────────────┘
    
  2. Pointer-Based Storage (Optimized for Fast Traversal)
    (Alice) --> [Pointer to R2] --> (Acme)
    

📌 Advantages Over RDBMS:
O(1) Traversal → Direct memory pointers to related nodes
No Need for Join Tables → Avoids costly JOIN operations
Relationship Metadata → Can store properties like {since: 2022}


Key Differences Between Node and Relationship StoragePermalink

| Feature | Node Storage | Relationship Storage | |—————-|————-|—————-| | Data Type | Entity (Person, Company) | Connection (e.g., FRIEND, WORKS_AT) | | Primary Key | Unique Node ID | Unique Relationship ID | | Storage Format | Adjacency List, Key-Value Store | Linked List, Pointer-based | | Has Properties? | ✅ Yes | ✅ Yes | | Pointer to Other Nodes? | ✅ Yes (stores relation pointers) | ✅ Yes (start & end node pointers) | | Optimized For | Entity lookups | Fast relationship traversal | | Equivalent in RDBMS | Table row | Foreign key / Join table |


Example: How GraphDB Stores a Social Network Consider this scenario:
📌 Alice (ID:1) is friends with Bob (ID:3) and works at Acme (ID:2).

🟢 Node StoragePermalink

Node 1: {Label: Person, Name: "Alice"} → Points to [R1, R2]
Node 2: {Label: Company, Name: "Acme"}  → Points to [R2]
Node 3: {Label: Person, Name: "Bob"}   → Points to [R1]

🔵 Relationship StoragePermalink

R1: {Type: FRIEND, Start: 1, End: 3, Since: 2020}
R2: {Type: WORKS_AT, Start: 1, End: 2, Since: 2022}

💡 Querying the RelationshipPermalink

  • GraphDB Query (Neo4j)
    MATCH (a:Person {name: "Alice"})-[:WORKS_AT]->(c:Company)
    RETURN a, c;
    
  • RDBMS Query (SQL with JOINs)
    SELECT p.name, c.name
    FROM persons p
    JOIN works_at w ON p.id = w.person_id
    JOIN companies c ON w.company_id = c.id
    WHERE p.name = 'Alice';
    

GraphDB Wins because it directly accesses connected nodes instead of doing JOINs!


Final Verdict: Why GraphDB Storage is Better for RelationshipsPermalink

Nodes store direct references to relationships → Faster lookup
Relationships store both start and end pointers → No need for foreign keys
Traversal is O(1) compared to O(n) in SQL JOINs
Relationships can have metadata (e.g., “since: 2022”)

TL;DR:

  • Nodes store entity data + pointers to relationships.
  • Relationships store start & end node references + metadata.
  • GraphDB eliminates foreign keys and JOINs, leading to faster relationship queries.

How to install Neo4j on local machine?Permalink

  • https://neo4j.com/download/
  • For application and application of GraphDB in AI you can follow this github repo: Advanced-QA-and-RAG-Series

Updated:

Leave a comment